Anchored HTML File of EIDs

	WEB-based GEne SeT AnaLysis Toolkit

	*Translating gene lists into biological insights...*

User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

The results for each enriched gene sets are listed in this table.
For each gene set, the first row lists database name, gene set name , and corresponding gene set ID.
The second row lists the following statistics:

C: the number of reference genes in the category
O: the number of genes in the gene set and also in the category
E: the expected number in the category
R: ratio of enrichment
rawP: p value from hypergeometric test
adjP: p value adjusted by the multiple test adjustment

Finally, genes in the pathway are listed. For each gene, the table lists the user uploaded ID and value (optional), Entrez ID, Ensembl Gene Stable ID, Gene symbol, and description. Ensembl Gene Stable ID and Entrez Gene ID are linked to the Ensembl and Entrez Gene databases, respectively.

Database:KEGG pathway Name:PPAR signaling pathway ID:03320
C=70; O=2; E=0.12; R=16.00; rawP=0.0070; adjP=0.0140
Index	UserID	Value	Gene Symbol	Gene Name	EntrezGene	Ensembl
1	ENSG00000130304	NA	SLC27A1	solute carrier family 27 (fatty acid transporter), member 1	376497	ENSG00000130304
2	ENSG00000204231	NA	RXRB	retinoid X receptor, beta	6257	ENSG00000204231

Database:KEGG pathway Name:Adipocytokine signaling pathway ID:04920
C=68; O=2; E=0.12; R=16.47; rawP=0.0066; adjP=0.0140
Index	UserID	Value	Gene Symbol	Gene Name	EntrezGene	Ensembl
1	ENSG00000076555	NA	ACACB	acetyl-CoA carboxylase beta	32	ENSG00000076555
2	ENSG00000204231	NA	RXRB	retinoid X receptor, beta	6257	ENSG00000204231

Database:KEGG pathway Name:Metabolic pathways ID:01100
C=1130; O=4; E=2.02; R=1.98; rawP=0.1435; adjP=0.1435
Index	UserID	Value	Gene Symbol	Gene Name	EntrezGene	Ensembl
1	ENSG00000076555	NA	ACACB	acetyl-CoA carboxylase beta	32	ENSG00000076555
2	ENSG00000160285	NA	LSS	lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)	4047	ENSG00000160285
3	ENSG00000171097	NA	CCBL1	cysteine conjugate-beta lyase, cytoplasmic	883	ENSG00000171097
4	ENSG00000198276	NA	UCKL1	uridine-cytidine kinase 1-like 1	54963	ENSG00000198276

Database:KEGG pathway Name:Pathways in cancer ID:05200
C=326; O=2; E=0.58; R=3.44; rawP=0.1154; adjP=0.1435
Index	UserID	Value	Gene Symbol	Gene Name	EntrezGene	Ensembl
1	ENSG00000159692	NA	CTBP1	C-terminal binding protein 1	1487	ENSG00000159692
2	ENSG00000204231	NA	RXRB	retinoid X receptor, beta	6257	ENSG00000204231

WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).